Alex’s Defense! (EDIT: Now Dr. Alex)

One of the worst things a grad student can hear is “so, when are you graduating?” Even the best of grad students (whatever that means), with a set and followed timeline, will know it’s not just finishing some classes and leaving. The final thing you must do when completing a research-based degree is defend your thesis/dissertation. That oh-so-simple question calls to mind the journey one is about to embark on in order to finally be set free. Years of work, cumulated in a huge written document, then presented publicly, and then scrutinized by your committee. Despite not having my PhD defense for a few more years still, I got a good taste of it when defending my Master’s thesis back in November. Let me tell you, that was a LOT. Now, after years of grueling lab work and months of being cooped up furiously writing, my lovely partner Alex has defended his PhD dissertation. Obviously, I need to celebrate him.



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Book Review: The Body Keeps Score

TW: trauma (of course), SA, war/combat, etc.

Recently, internet reading communities have been re-recommending the 2014 book The Body Keeps Score. It has a pretty blue cover with Icarus by Henri Matisse, often paired with peaceful music and “Self-Help Books that Changed Me” titles by book content creators. I became curious, in the same way I now need to read Song of Achilles from how largely it made its rounds on my for-you page and friends’ goodreads lists.

The Body Keeps Score discusses the effects of trauma on the body by Dutch psychiatrist and trauma expert, Dr. Bessel van der Kolk. He goes through the book using real patient stories to discuss how it affects the psyche, the physiology of trauma, and different non-medicinal treatment methods. From a general perspective, the book is informative on the different types of trauma, how trauma survivors’ bodies and brains may respond and why, and ways people can approach their trauma to better themselves.



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Conditions Matter!

For practically the whole spring semester and up until recently, a few of my fungal strains have been acting up. It is quite distressing when an experiment you’ve done 10’s to 100’s of times suddenly stops working and you don’t know why. You’ve done everything the same as before, so what gives?! Fungi, being the funky little beings they are, sometimes do odd things if their spores have been in the fridge too long, passaged too many times, or even get a random mutation. We have stocks in out -80C freezer for this very purpose– to start from scratch, so to speak. I don’t vibe with non-fungal organisms, but I think similar things can happen to animal cell lines. I want to say some can lose specially-designed phenotypes, stop dividing, and become genetically unstable.



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Darwin’s Star Orchid

Today I want to share with you one of my favourite stories of co-evolution, and how sometimes the right answer can seem the most unlikely. For those of you who don’t know, Charles Darwin spent a lot of time researching orchids, to the point where he even published a book called Fertilisation of Orchids (or its full name, On the Various Contrivances by Which British and Foreign Orchids Are Fertilised by Insects, and On the Good Effects of Intercrossing). At the time, 19th century Europe just caught wind of orchids, and it was all the rage to collect them. Wealthy collectors payed hefty sums to purchase them from explorers who brought them back from tropical regions of the world. As they did not yet understand their reproductive cycle, which we now know requires fungi to grow from seed, the plants had to be taken and kept alive for long, often unfavorably cold voyages. Early terrariums, dubbed “Wardian cases,” were often used to protect the plants during these times. They dubbed this Victorian orchid-collecting phenomena “orchidelirium“.



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Photosynthetic Mycelium

I always joke with friends that fungi can do anything the scientist puts their mind to, or the opposite if they haven’t pleased the fungal gods that day. They’re also quite fun because they ruin the party when you get into those “what is a species” and “what is a cell” debates with people. Fungi honestly blur, cross, destroy, and defecate on those lines. They’re everywhere and they do what they want. Although maybe I shouldn’t say that, it makes them sound selfish when they also have potential to be very cooperative, generous, and communicative. We wouldn’t have this lush world colonized with land plants if it weren’t for the fungi aiding with nutrient intake and clearing old debris. But today I want to share something I personally found unique– photosynthetic mycelium.



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Shades of Polymathy

“Jack of all trades, master of none”— a colloquial phrase for someone with a variety of skills but none at a level of mastery. I even used it as my topic for my undergrad university entrance essay, talking about how I had a lot of skills that led me to my choice of major and how potential acceptance would allow me to eventually “master” one skill. In recent years, though, the “complete” saying made its way ’round the world wide web, “jack of all trades, master of none, but oftentimes better than master of one,” although from what I could find, the last part is actually a 21st century addition and is not originally part of the phrase. While a bit cheesy to see on Etsy prints, I really find value in the addition. It shows that there is inherent worth in having a wide skill or knowledge base over only knowing a sole topic. Personally, I think masters of one still have value and can help push fields into new frontiers, but, well, so can jacks of all trades, no? Why can’t you be a master of two? Or maybe a master of an interdisciplinary field? Or someone who masters things consecutively in fields with the same base skills? Or maybe you’re just really good at mastering things?



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Having the “Gall”

While IDing plants, I’ve noticed that sometimes when looking back at photos I’ve taken, the leaves have little bumps on them. I’ve always just assumed it’s a fungus growing or a deformity of the leaf. That is, until now, where I was informed those bumps actually have a name, and they can be caused by a wide variety of etiologies. They’re called “galls” or “cecidia” and are essentially growths/tumors that can form on any part of the plant, sometimes due to irritation and sometimes due to the organism of cause living inside/promoting the formation of it.



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Book Review: Molecular Invasion

When I purchased this book, I was fully expecting a conversation on the ethics of genetic engineering and various biotechnologies. I figured it would broach topics such as where the stopping point was in between acceptable things like gene therapy and unacceptable things like genetically modifying entire human embryos. As a scientist, researcher, and graduate student who works with genetics in my lab, such considerations would be valuable to me and my studies, yet this book does not go there. Instead, it provides a sharp criticism of any form of genetic modification from a severely scientifically uneducated standpoint, often confusing or incorrectly stating information. While I must take into consideration that this book is from 2002 and has more of a focus on the societal aspects, I cannot excuse their blatant picking-and-choosing mindset, not to mention use of theological and artistic materials as their source of morals.



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Book Review: 21st Century Guidebook to Fungi, Chapter 4

Apical extension is a major characteristic of fungi with tubular hyphae. As exploratory organisms, being able to extend and dip their mycelia into the space around them is a crucial part of survival. They produce biomass, such as lipids and proteins, which are delivered to the tips of their filaments via vesicle trafficking, allowing them to add on their ends to keep growing outward. Once a fungus finds something of value, extension stops and branching begins to milk whatever food source they found. Other outwardly extending systems, such as blood vessels in humans, may seem similar, but these traits evolved convergently, such being that there are only so many ways to branch out radially with autotropism, or avoiding bumping into yourself. On a side note, sometimes positive autotropism is needed, specifically for hyphal fusions, but this is not the case most of the time.



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Book Review: 21st Century Guidebook to Fungi, Chapter 3

As was mentioned in Chapter 1, the extent of fungal diversity is vast yet lies in highly uncharted territories; there is simply so much we still don’t know! Although there are millions of undiscovered species, there are also species that have such different sexual and asexual forms that they are wrongly labeled as two separate entities. Scientists are improving their methods, leading to a better understanding of how they should be classified. The chapter goes through the major players in the fungal kingdom, showing what differentiates the phyla.



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Book Review: 21st Century Guidebook to Fungi, Chapter 2

Chapter 2 starts from the beginning of the universe, detailing how our little plot of space was created and why its conditions were crucial to making it what it is today. To walk you through, 13.77 billion years ago, everything began with the Big Bang. As this novel thing called “time” progressed, we see the creation of the first atoms (hydrogen) and, depending on the density of certain spots in space, small variations overtime could become much more exaggerated and form galaxies. Nuclear fission in stars made new elements, providing us with the chemical evolution that later spawned life. Some of these, mostly iron and silicates, formed Earth 4.5 billion years ago. Both some radioactive elements as well as the impact from Theia (the planet that hit us and created the moon) melted much of the iron and gives us our molten iron core. This is why we have the magnetosphere protecting us from solar wind and along with the ozone stopping UV-C (germicidal radiation) at about 35k altitude. Without it, living cells wouldn’t be able to exist. Additionally, our planet is a “Goldilocks Planet,” as it is in such a position that it is not too hot nor too cold for life. Our axis provides us with seasons, and our moon provides tidal effects in water and rock. Without all this, life would be unlikely to have formed all those 3.5 billion years ago…



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Book Review: 21st Century Guidebook to Fungi, Chapter 1

Over the last few months, I’ve been looking into various grad school programs and labs that fit my interests. I managed to find one that I really like and the PI already told me to apply! I am keeping my fingers crossed, because I genuinely want the position but I still won’t know for some time if it’ll come to fruition. Anyways, while we were chatting, I asked him for book recommendations, and he gave me the title of the textbook he uses for his class: 21st Century Guidebook to Fungi 2nd Edition. Like the good little student I am, I purchased the textbook and brought it with me to Honduras to start cracking into. Since mycology is hugely understudied (and I need a more foolproof way to take notes here given my original notebook got a bit waterlogged from an unexpected and extremely sudden downpour), I figured I’d write little summaries of each chapter here on the world wide web.



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Ghost Pipe Plant & Some (Not Really) Controversy

Typically defined by their autotrophic nature, plants are known for their ability to use photosynthesis via their chloroplasts to survive. This is pretty well-known and undisputed– even a kindergartner could tell you that plants are green and feed from the sun! But what if I told you there were plants out there that didn’t do this? Dun dun dun!

Although not many species have this feature, some plants actually don’t have chlorophyll pigments. The one in particular I want to tell you about today is called the Ghost Pipe Plant (Monotropa uniflora). This plant is a type of mycoheterotroph, which basically means that it feeds off of fungi rather than using the sunlight or other sources for sustenance. For the most part, they stay underground unless they are trying to seed.



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Vogelkop Bowerbird

I thought I’d share an interesting species today.

I was watching some bird videos from the Cornell Lab of Ornithology and found one of the Vogelkop bowerbird (Amblyornis inornata). It primarily lives in Western New Guinea, Indonesia, which made me wonder if it was part of the “Lost World” findings that went on in that area. Sadly, it looks like the only bowerbird included in that was the golden-fronted bowerbird (Amblyornis flavifrons). Bowerbirds in general live in Australia and New Guinea, with twenty species, both individual and shared, between the both of them. Things like size and egg number range depending on the species, but fancy courtship efforts seem to be the common theme among all. I am not going to go into much detail about it, but there are different types of bowers they build, vocal mimics they do, special ways of arranging their chosen items, sabotaging other males’ bowers, and more. I read that some species even arrange the items to create optical illusions and forced perceptions. 



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Resupinate & Non-Resupinate Orchids

Wanna hear something mind-blowing? There’s a good chance every orchid flower you have ever seen was actually upside down.

I recently learned about resupination, which is a term used to describe plants that rotate their leaves or flowers upside down… err right side up, technically? This is practically the norm for orchid flowers. I was going to post an orchid time-lapse video that showed this (as I originally thought they all have funky twisting patterns as they physically open), but I looked and looked to no avail. So, after doing some research, it seems that this step can occur before or during blooming. (It kind of reminds me of how humans can have situs inversus, although I’m sure those individuals with it are very glad it happened in the womb.) Now, what I want to know is if this occurs during bud development, or just in a stage before the blooming is outwardly visible to bystanders but after the bud is already developed. I can confirm that this does not happen after opening, though.



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A Brief Evolutionary Look at Psilocybin

Hello! I decided to share an essay I wrote for my Environmental Physiology class as I found the topic rather interesting.
The prompt: “Discuss the evolution of a toxin or toxin delivery mechanism in an animal, plant, or other group of organisms. Explain the potential adaptive value of the toxin and discuss its potential cost to the organism.”



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A little bit on orchid anatomy

Orchids are really freaking cool. Although not my favourite plant nor flower, they manage to captivate me with their beauty, and well, just really wicked evolved traits. Once the libraries open up again (thanks, coronavirus), I will look for a more detailed book on them, but for right now, I have a mix of Internet and previously obtained knowledge to share.

The Orchidaceae are a family of plants more commonly known as orchids. Many know them for their regal yet tropical look and their long lasting flowers. There are over 28,000 species of them according to our friend, Wikipedia the Great, and typically are classified as “orchids” by their anatomy. I could not find actual criteria for an orchid, but it pretty much seems that most non-orchids are not smart enough to bamboozle us, so anatomy is a good baseline. If the flower can make it past that test, there’s a good chance they’re the real deal. I think if we want any more substantial criteria, we’d have to go ask a taxonomist– they probably do have an actual checklist for what qualifies.



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